Review



genechip command console software agcc  (Thermo Fisher)


Bioz Verified Symbol Thermo Fisher is a verified supplier
Bioz Manufacturer Symbol Thermo Fisher manufactures this product  
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
  • 90

    Structured Review

    Thermo Fisher genechip command console software agcc

    Genechip Command Console Software Agcc, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+agcc+software/genechip+command+console+software/pmc10966312-62-0-6
    Average 90 stars, based on 1 article reviews
    genechip command console software agcc - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "Phenotypic switching as a non-genetic mechanism of resistance predicts antibody therapy regimens"

    Article Title: Phenotypic switching as a non-genetic mechanism of resistance predicts antibody therapy regimens

    Journal: iScience

    doi: 10.1016/j.isci.2024.109450


    Figure Legend Snippet:

    Techniques Used: Blocking Assay, Control, Recombinant, Viability Assay, Enzyme-linked Immunosorbent Assay, Hybridization, Staining, Sequencing, Software, Simple Western

    Related Articles

    Staining:

    Article Title: Transcriptome Analysis Identifies LINC00152 as a Biomarker of Early Relapse and Mortality in Acute Lymphoblastic Leukemia
    Article Snippet: The RNA was converted into cDNA and labeled with the WT Plus Reagents Kit (Affymetrix, Santa Clara, CA, USA) mixed with the Poly-A RNA spike-in controls and hybridized on the array according to the manufacturer’s instructions (each hybridization was performed in duplicate). .. Arrays were washed, stained and scanned using a GeneChip Scanner 3000 7G (Affymetrix, Santa Clara, CA, USA), followed by the transformation of fluorescence data into CEL files using the Affymetrix GeneChip Command Console (AGCC) software. .. Background correction, probe sets signal integration, and quantile normalization were performed through the robust multi-array average (RMA) algorithm, also implemented in Affymetrix Expression Console (ECS) software, and following the protocols established by the manufacturer (Affymetrix Inc., Santa Clara, CA, USA).

    Transformation Assay:

    Article Title: Transcriptome Analysis Identifies LINC00152 as a Biomarker of Early Relapse and Mortality in Acute Lymphoblastic Leukemia
    Article Snippet: The RNA was converted into cDNA and labeled with the WT Plus Reagents Kit (Affymetrix, Santa Clara, CA, USA) mixed with the Poly-A RNA spike-in controls and hybridized on the array according to the manufacturer’s instructions (each hybridization was performed in duplicate). .. Arrays were washed, stained and scanned using a GeneChip Scanner 3000 7G (Affymetrix, Santa Clara, CA, USA), followed by the transformation of fluorescence data into CEL files using the Affymetrix GeneChip Command Console (AGCC) software. .. Background correction, probe sets signal integration, and quantile normalization were performed through the robust multi-array average (RMA) algorithm, also implemented in Affymetrix Expression Console (ECS) software, and following the protocols established by the manufacturer (Affymetrix Inc., Santa Clara, CA, USA).

    Article Title: Retinoic acid-induced 1 gene haploinsufficiency alters lipid metabolism and causes autophagy defects in Smith-Magenis syndrome.
    Article Snippet: .. Scanning and data extraction of the microarray were followed by transformation of the fluorescence data into CEL files using Affymetrix GeneChip Command Console (AGCC) software. ..

    Fluorescence:

    Article Title: Transcriptome Analysis Identifies LINC00152 as a Biomarker of Early Relapse and Mortality in Acute Lymphoblastic Leukemia
    Article Snippet: The RNA was converted into cDNA and labeled with the WT Plus Reagents Kit (Affymetrix, Santa Clara, CA, USA) mixed with the Poly-A RNA spike-in controls and hybridized on the array according to the manufacturer’s instructions (each hybridization was performed in duplicate). .. Arrays were washed, stained and scanned using a GeneChip Scanner 3000 7G (Affymetrix, Santa Clara, CA, USA), followed by the transformation of fluorescence data into CEL files using the Affymetrix GeneChip Command Console (AGCC) software. .. Background correction, probe sets signal integration, and quantile normalization were performed through the robust multi-array average (RMA) algorithm, also implemented in Affymetrix Expression Console (ECS) software, and following the protocols established by the manufacturer (Affymetrix Inc., Santa Clara, CA, USA).

    Article Title: The genomic landscape of Epstein-Barr virus-associated pulmonary lymphoepithelioma-like carcinoma
    Article Snippet: .. The raw intensity data (DAT) were analyzed with Affymetrix® GeneChip® Command Console® (AGCC) software (v4.1.2; Affymetrix) and generated array fluorescence intensity (CEL) files. .. For FFPE and frozen samples, normalized log R ratio (LRR) and B allele frequency (BAF) for all the available probes in each sample were extracted by the OncoScan Console (v1.2; Affymetrix) from fluorescence intensity (CEL) files using FFPE Analysis NA33 and REF103 Analysis NA33 as normal reference panel, respectively.

    Article Title: Retinoic acid-induced 1 gene haploinsufficiency alters lipid metabolism and causes autophagy defects in Smith-Magenis syndrome.
    Article Snippet: .. Scanning and data extraction of the microarray were followed by transformation of the fluorescence data into CEL files using Affymetrix GeneChip Command Console (AGCC) software. ..

    Software:

    Article Title: Transcriptome Analysis Identifies LINC00152 as a Biomarker of Early Relapse and Mortality in Acute Lymphoblastic Leukemia
    Article Snippet: The RNA was converted into cDNA and labeled with the WT Plus Reagents Kit (Affymetrix, Santa Clara, CA, USA) mixed with the Poly-A RNA spike-in controls and hybridized on the array according to the manufacturer’s instructions (each hybridization was performed in duplicate). .. Arrays were washed, stained and scanned using a GeneChip Scanner 3000 7G (Affymetrix, Santa Clara, CA, USA), followed by the transformation of fluorescence data into CEL files using the Affymetrix GeneChip Command Console (AGCC) software. .. Background correction, probe sets signal integration, and quantile normalization were performed through the robust multi-array average (RMA) algorithm, also implemented in Affymetrix Expression Console (ECS) software, and following the protocols established by the manufacturer (Affymetrix Inc., Santa Clara, CA, USA).

    Article Title: Gene expression profiling reveals B cells are highly educated by the pancreatic environment during autoimmune diabetes
    Article Snippet: After hybridization, non-specifically bound material was removed by washing and specifically bound target was detected using the GeneChip® Hybridization, Wash and Stain Kit (ThermoFisher Scientific), in conjunction with the GeneChip® Fluidics Station 450 (Affymetrix). .. The arrays were scanned using a GeneChip® Scanner 3000 7G (Affymetrix) in conjunction with Affymetrix Genechip® Command Console (AGCC) software and .CEL files were generated from the resultant probe cell intensity data. .. Total RNA was converted to cDNA using the High-Capacity RNA-to-cDNATM kit (ThermoFisher) according to the manufacturer’s instructions.

    Article Title: Regulation of human trophoblast cell syncytialization by transcription factors STAT5B and NR4A3.
    Article Snippet: In human trophoblast cells, cyclic AMP or its inducer forskolin (FSK) activates two downstream signaling molecules, protein kinase A (PKA) and exchange protein directly activated by cAMP (EPAC), both of which induce syncytialization, cell fusion and the production of human chorionic gonadotropin (hCG) and progesterone.. However, a transcription factor other than GCM1 and molecular mechanisms associated with these events have not been well characterized.. To identify novel transcription factors involved in syncytialization of cAMP-stimulated human choriocarcinoma BeWo cells, the microarray analysis was performed with RNAs extracted from PKAor EPAC-selective cAMP analog-stimulated BeWo cells, from which two up-regulated transcription factors, STAT5 and NR4A3, were found.

    Article Title: The genomic landscape of Epstein-Barr virus-associated pulmonary lymphoepithelioma-like carcinoma
    Article Snippet: .. The raw intensity data (DAT) were analyzed with Affymetrix® GeneChip® Command Console® (AGCC) software (v4.1.2; Affymetrix) and generated array fluorescence intensity (CEL) files. .. For FFPE and frozen samples, normalized log R ratio (LRR) and B allele frequency (BAF) for all the available probes in each sample were extracted by the OncoScan Console (v1.2; Affymetrix) from fluorescence intensity (CEL) files using FFPE Analysis NA33 and REF103 Analysis NA33 as normal reference panel, respectively.

    Article Title: Retinoic acid-induced 1 gene haploinsufficiency alters lipid metabolism and causes autophagy defects in Smith-Magenis syndrome.
    Article Snippet: .. Scanning and data extraction of the microarray were followed by transformation of the fluorescence data into CEL files using Affymetrix GeneChip Command Console (AGCC) software. ..

    Article Title: Structural variants of Salmonella Typhimurium lipopolysaccharide induce less dimerization of TLR4/MD-2 and reduced pro-inflammatory cytokine production in human monocytes.
    Article Snippet: The GeneChips were scanned with a GeneChip Scanner 3000 7G (Affymetrix). .. Affymetrix GeneChip Command Console (AGCC) software was used to transform DAT files into CEL files. .. Affymetrix Expression Console software was then used to process the CEL files with the Robust Multichip Analysis (RMA) algorithm, including background correction, probeset signal integration and quantile normalization, to produce CHP files.

    other:

    Article Title: Gene expression-based dissection of inter-histotypes, intra-histotype and intra-tumor heterogeneity in pediatric tumors.
    Article Snippet: Scanning was performed on Affymetrix GeneChip Scanner 3000 TG System and primary data were collected using GeneChipTM Command ConsoleTM (AGCC) Software (ThermoFisher Scientific)19.

    Article Title: Whole genome profiling of short-term hypoxia induced genes and identification of HIF-1 binding sites provide insights into HIF-1 function in Caenorhabditis elegans
    Article Snippet: The Affymetrix® GeneChip® Command ConsoleTM (AGCC) software was used to generate probe cell intensity data (.CEL) files.

    Generated:

    Article Title: Gene expression profiling reveals B cells are highly educated by the pancreatic environment during autoimmune diabetes
    Article Snippet: After hybridization, non-specifically bound material was removed by washing and specifically bound target was detected using the GeneChip® Hybridization, Wash and Stain Kit (ThermoFisher Scientific), in conjunction with the GeneChip® Fluidics Station 450 (Affymetrix). .. The arrays were scanned using a GeneChip® Scanner 3000 7G (Affymetrix) in conjunction with Affymetrix Genechip® Command Console (AGCC) software and .CEL files were generated from the resultant probe cell intensity data. .. Total RNA was converted to cDNA using the High-Capacity RNA-to-cDNATM kit (ThermoFisher) according to the manufacturer’s instructions.

    Article Title: The genomic landscape of Epstein-Barr virus-associated pulmonary lymphoepithelioma-like carcinoma
    Article Snippet: .. The raw intensity data (DAT) were analyzed with Affymetrix® GeneChip® Command Console® (AGCC) software (v4.1.2; Affymetrix) and generated array fluorescence intensity (CEL) files. .. For FFPE and frozen samples, normalized log R ratio (LRR) and B allele frequency (BAF) for all the available probes in each sample were extracted by the OncoScan Console (v1.2; Affymetrix) from fluorescence intensity (CEL) files using FFPE Analysis NA33 and REF103 Analysis NA33 as normal reference panel, respectively.

    Expressing:

    Article Title: Regulation of human trophoblast cell syncytialization by transcription factors STAT5B and NR4A3.
    Article Snippet: In human trophoblast cells, cyclic AMP or its inducer forskolin (FSK) activates two downstream signaling molecules, protein kinase A (PKA) and exchange protein directly activated by cAMP (EPAC), both of which induce syncytialization, cell fusion and the production of human chorionic gonadotropin (hCG) and progesterone.. However, a transcription factor other than GCM1 and molecular mechanisms associated with these events have not been well characterized.. To identify novel transcription factors involved in syncytialization of cAMP-stimulated human choriocarcinoma BeWo cells, the microarray analysis was performed with RNAs extracted from PKAor EPAC-selective cAMP analog-stimulated BeWo cells, from which two up-regulated transcription factors, STAT5 and NR4A3, were found.

    Extraction:

    Article Title: Retinoic acid-induced 1 gene haploinsufficiency alters lipid metabolism and causes autophagy defects in Smith-Magenis syndrome.
    Article Snippet: .. Scanning and data extraction of the microarray were followed by transformation of the fluorescence data into CEL files using Affymetrix GeneChip Command Console (AGCC) software. ..

    Microarray:

    Article Title: Retinoic acid-induced 1 gene haploinsufficiency alters lipid metabolism and causes autophagy defects in Smith-Magenis syndrome.
    Article Snippet: .. Scanning and data extraction of the microarray were followed by transformation of the fluorescence data into CEL files using Affymetrix GeneChip Command Console (AGCC) software. ..



    Similar Products

    90
    Thermo Fisher genechip command console software agcc

    Genechip Command Console Software Agcc, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+agcc+software/genechip+command+console+software/pmc10966312-62-0-6
    Average 90 stars, based on 1 article reviews
    genechip command console software agcc - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    90
    Thermo Fisher genechip ® command console ® software (agcc

    Genechip ® Command Console ® Software (Agcc, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+agcc+software/pmc11526388-163-27-26
    Average 90 stars, based on 1 article reviews
    genechip ® command console ® software (agcc - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    90
    Thermo Fisher genechip command console 4.0 (agcc 4.0.0.1567) software

    Genechip Command Console 4.0 (Agcc 4.0.0.1567) Software, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+agcc+software/pm39319406-88-11-10
    Average 90 stars, based on 1 article reviews
    genechip command console 4.0 (agcc 4.0.0.1567) software - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    90
    Thermo Fisher genechip command console (agcc) - fluidics control software v4.0.0

    Genechip Command Console (Agcc) Fluidics Control Software V4.0.0, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+agcc+software/pmc11384956-404-25-24
    Average 90 stars, based on 1 article reviews
    genechip command console (agcc) - fluidics control software v4.0.0 - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    90
    Thermo Fisher genechip command console (agcc) software 4.0

    Genechip Command Console (Agcc) Software 4.0, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+agcc+software/pm38961223-578-21-20
    Average 90 stars, based on 1 article reviews
    genechip command console (agcc) software 4.0 - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    86
    Thermo Fisher genechip command console agcc software

    Genechip Command Console Agcc Software, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+agcc+software/pmc11093353-234-2-1
    Average 86 stars, based on 1 article reviews
    genechip command console agcc software - by Bioz Stars, 2026-10
    86/100 stars
      Buy from Supplier

    90
    Thermo Fisher genechip command console® software (agcc)

    Genechip Command Console® Software (Agcc), supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+agcc+software/pm38242496-97-10-9
    Average 90 stars, based on 1 article reviews
    genechip command console® software (agcc) - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    90
    Thermo Fisher agcc software genechip command console software

    Agcc Software Genechip Command Console Software, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+agcc+software/pm37838283-99-9-11
    Average 90 stars, based on 1 article reviews
    agcc software genechip command console software - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    86
    Thermo Fisher genechip command console agcc 86 software

    Genechip Command Console Agcc 86 Software, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+agcc+software/pmc09613476__41375_2022_1671_MOESM1_ESM-33-5-4
    Average 86 stars, based on 1 article reviews
    genechip command console agcc 86 software - by Bioz Stars, 2026-10
    86/100 stars
      Buy from Supplier

    90
    Thermo Fisher genechip command console software (agcc

    Genechip Command Console Software (Agcc, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+agcc+software/pmc10718454-267-16-15
    Average 90 stars, based on 1 article reviews
    genechip command console software (agcc - by Bioz Stars, 2026-10
    90/100 stars
      Buy from Supplier

    Image Search Results


    Journal: iScience

    Article Title: Phenotypic switching as a non-genetic mechanism of resistance predicts antibody therapy regimens

    doi: 10.1016/j.isci.2024.109450

    Figure Lengend Snippet:

    Article Snippet: GeneChip Command Console Software (AGCC) , Thermo Fisher Scientific , https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-genechip-command-console-software.html.

    Techniques: Blocking Assay, Control, Recombinant, Viability Assay, Enzyme-linked Immunosorbent Assay, Hybridization, Staining, Sequencing, Software, Simple Western